open_targets.so

Python

In [1]:

import bedrock_bio as bb

rel = bb.load_table('open_targets.so')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()

Out[1]:

	id	label	version
0	SO:0005854	gene_cassette_array	26.09
1	SO:0001496	telomeric_repeat	26.09
2	SO:0000165	enhancer	26.09
3	SO:0002344	mt_SSU_rRNA	26.09
4	SO:0001012	DNAzyme	26.09

R

In [1]:

library(bedrockbio)

lf <- load_table("open_targets.so")
df <- head(lf, 5) |> collect()

head(df)

Out[1]:

Sample output (5 rows)
   id         | label               | version
   ---------- | ------------------- | -------
0  SO:0005854 | gene_cassette_array | 26.09
1  SO:0001496 | telomeric_repeat    | 26.09
2  SO:0000165 | enhancer            | 26.09
3  SO:0002344 | mt_SSU_rRNA         | 26.09
4  SO:0001012 | DNAzyme             | 26.09

Description

Sequence ontology lookup table [Ontology]

Partitions

Not partitioned.

Schema

Column	Type	Description
id	TEXT	Sequence ontology term identifier [bioregistry:so]
label	TEXT	Sequence ontology term label
version	TEXT	Open Targets Platform release version (major.minor), e.g. 26.09. Added during ingest.