hgnc.family_aliases

Python

In [1]:

import bedrock_bio as bb

rel = bb.load_table('hgnc.family_aliases')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()

Out[1]:

	sources	alias_id	family_id	alias
0	[{'url': 'https://storage.googleapis.com/publi...	10	211	P1 receptors
1	[{'url': 'https://storage.googleapis.com/publi...	1001	1134	GNAT
2	[{'url': 'https://storage.googleapis.com/publi...	1007	480	LAMMER kinases
3	[{'url': 'https://storage.googleapis.com/publi...	1008	480	CDC-like kinases
4	[{'url': 'https://storage.googleapis.com/publi...	1009	811	ATP-binding cassette, sub-family G (WHITE)

R

In [1]:

library(bedrockbio)

lf <- load_table("hgnc.family_aliases")
df <- head(lf, 5) |> collect()

head(df)

Out[1]:

Sample output (5 rows, showing 3 of 4 columns)
   alias_id | family_id | alias
   -------- | --------- | ------------------------
0  10       | 211       | P1 receptors
1  1001     | 1134      | GNAT
2  1007     | 480       | LAMMER kinases
3  1008     | 480       | CDC-like kinases
4  1009     | 811       | ATP-binding cassette, s…

Description

Alternative names for HGNC gene families.

Partitions

Not partitioned.

Schema

Column	Type	Description
sources	STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[]	Provenance for the HGNC gene-family family_alias.csv file.
alias_id	TEXT	Source identifier for the gene-family alias record.
family_id	TEXT	HGNC gene-family identifier.
alias	TEXT	Alternative gene-family name.