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bedrock.bio

open_targets.evidence_uniprot_literature

import bedrock_bio as bb

rel = bb.load_table('open_targets.evidence_uniprot_literature')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()
id targetFromSourceId diseaseFromSourceMappedId confidence datasourceId datatypeId diseaseFromSource diseaseFromSourceId literature targetModulation qualityControls diseaseId targetId publicationDate evidenceDate score version
0 5081c7eafe29941530d230601ed5bf22fe66f140 Q9H257 Orphanet_1334 high uniprot_literature genetic_literature Immunodeficiency 103, susceptibility to fungal... OMIM:212050 [26941346, 25372963, 25057046, 26658378, 33558... up_or_down [] MONDO_0015279 ENSG00000187796 2009-10-01 2009-10-01 1.0 26.09
1 5540034ca7befc9086d2b72a5ded5a915db41b3c Q8IXV7 EFO_0000183 high uniprot_literature genetic_literature Lymphoma, Hodgkin, classic OMIM:236000 [19706467] up_or_down [] MONDO_0004952 ENSG00000185909 2009-08-12 2009-08-12 1.0 26.09
2 637038e3343a2f5320d9cb8accb1b102cf64a333 A6NNB3 MONDO_0012591 high uniprot_literature genetic_literature Osteogenesis imperfecta 5 OMIM:610967 [24519609, 22863190] up_or_down [] MONDO_0012591 ENSG00000206013 2012-08-02 2012-08-02 1.0 26.09
3 7159ba7a18f2b81685d800e5d2e068068282aa6c P32322 MONDO_0013051 high uniprot_literature genetic_literature Cutis laxa, autosomal recessive, 2B OMIM:612940 [19576563, 19648921] up_or_down [] MONDO_0013051 ENSG00000183010 2009-07-02 2009-07-02 1.0 26.09
4 7d4b6abf0c235161994d214a9768d0c8795ac61c Q14654 MONDO_0012522 high uniprot_literature genetic_literature Diabetes mellitus, transient neonatal, 3 OMIM:610582 [15784703, 15718250] up_or_down [] MONDO_0012522 ENSG00000187486 2005-02-17 2005-02-17 1.0 26.09

Description

Section titled “Description”

Protein-disease evidence based on literature curated by the Uniprot team [Target-Disease]

Partitions

Section titled “Partitions”

Not partitioned.

Schema

Section titled “Schema”
Column Type Description
id TEXT Identifer of the disease/target evidence
targetFromSourceId TEXT Target ID in resource of origin (accepted sources include Ensembl gene ID, Uniprot ID, gene symbol), only capital letters are accepted
diseaseFromSourceMappedId TEXT Mapped Open Targets disease identifier
confidence TEXT Confidence qualifier on the reported evidence
datasourceId TEXT Identifer of the evidence source
datatypeId TEXT Type of the evidence
diseaseFromSource TEXT Disease label from the original source
diseaseFromSourceId TEXT Disease identifier from the original source
literature TEXT[] List of PubMed or preprint reference identifiers
targetModulation TEXT Description of target modulation event
qualityControls TEXT[] Evidence quality flags
diseaseId TEXT Open Targets disease identifier
targetId TEXT Open Targets target identifier
publicationDate TEXT Date of the earliest publication supporting the evidence
evidenceDate TEXT Earliest data for the evidence
score DOUBLE Score of the evidence reflecting the strength of the disease/target relationship
version TEXT Open Targets Platform release version (major.minor), e.g. 26.09. Added during ingest.