evidence_eva_somatic

Identifier

open_targets.evidence_eva_somatic

Description

Disease-target evidence based on somatic variation from ClinVar, provided by the European Variation Archive [Target-Disease]

Partitions

• release
  • '26.06'

Schema

Column	Type	Description
targetId	TEXT	Open Targets target identifier
id	TEXT	Identifer of the disease/target evidence
targetFromSourceId	TEXT	Target ID in resource of origin (accepted sources include Ensembl gene ID, Uniprot ID, gene symbol), only capital letters are accepted
diseaseFromSourceMappedId	TEXT	Mapped Open Targets disease identifier
alleleOrigins	TEXT[]	Origin of the variant allele
allelicRequirements	TEXT[]	Inheritance patterns
clinicalSignificances	TEXT[]	Standard terms to define clinical significance
cohortPhenotypes	TEXT[]	Clinical features/phenotypes observed in studied individuals
confidence	TEXT	Confidence qualifier on the reported evidence
datasourceId	TEXT	Identifer of the evidence source
datatypeId	TEXT	Type of the evidence
diseaseFromSource	TEXT	Disease label from the original source
diseaseFromSourceId	TEXT	Disease identifier from the original source
literature	TEXT[]	List of PubMed or preprint reference identifiers
releaseDate	TEXT	Date of the release of the data in a ‘YYYY-MM-DD’ format
studyId	TEXT	Identifier of the study generating the data
variantFromSourceId	TEXT	Identifier of the disease-causing variant at source
variantFunctionalConsequenceId	TEXT	Sequence ontology (SO) identifier of the functional consequence of the variant [bioregistry:so]
variantHgvsId	TEXT	Identifier in HGVS notation of the disease-causing variant
variantId	TEXT	Identifier in CHROM_POS_REF_ALT notation of the disease-causing variant
variantRsId	TEXT	Variant reference SNP cluster ID (Rsid)
qualityControls	TEXT[]	Evidence quality flags
diseaseId	TEXT	Open Targets disease identifier
publicationDate	TEXT	Date of the earliest publication supporting the evidence
evidenceDate	TEXT	Earliest data for the evidence
score	DOUBLE	Score of the evidence reflecting the strength of the disease/target relationship
directionOnTrait	TEXT	Predicted direction of effect on the trait
directionOnTarget	TEXT	Effect of direction on target
release	TEXT	Partition column. Open Targets Platform release version (major.minor), e.g. 26.06. [Added during ingest.]