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bedrock.bio

interactions

Identifier

Section titled “Identifier”
ncbi_gene.interactions

Description

Section titled “Description”

Source-attributed molecular interaction records with up to two interactants and an optional resulting complex.

Partitions

Section titled “Partitions”

Not partitioned.

Schema

Section titled “Schema”
Column Type Description
sources STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[] Provenance for the NCBI GeneRIF interaction report.
first_interactant_taxon_id TEXT NCBI taxonomy identifier for the first, GeneID-associated interactant.
first_interactant_gene_id TEXT NCBI Gene identifier for the first interactant.
first_interactant_accession TEXT Versioned accession for the first interactant, if supplied.
first_interactant_name TEXT Name of the first interactant, if supplied.
interaction_phrase TEXT Short source-supplied phrase describing the interaction, if supplied.
second_interactant_taxon_id TEXT NCBI taxonomy identifier for the second interactant, if supplied.
second_interactant_id TEXT Source identifier for the second interactant, if supplied.
second_interactant_id_type TEXT Namespace of second_interactant_id, if supplied.
second_interactant_accession TEXT Versioned accession for the second interactant, if supplied.
second_interactant_name TEXT Name of the second interactant, if supplied.
complex_id TEXT Source identifier for the resulting complex, if supplied.
complex_id_type TEXT Namespace of complex_id, if supplied.
complex_name TEXT Name of the resulting complex, if supplied.
pubmed_ids TEXT[] PubMed citation identifiers associated with the interaction.
updated_at TIMESTAMPTZ Timestamp when NCBI last updated the interaction record; the source does not provide a timezone.
text TEXT Source-supplied GeneRIF interaction text, if supplied.
interaction_id TEXT Source-specific interaction identifier, if supplied.
interaction_id_type TEXT Namespace of interaction_id, if supplied.