hgnc.withdrawn

Python

In [1]:

import bedrock_bio as bb

rel = bb.load_table('hgnc.withdrawn')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()

Out[1]:

	sources	hgnc_id	status	symbol	merged_into
0	[{'url': 'https://storage.googleapis.com/publi...	HGNC:1	Entry Withdrawn	A12M1	[]
1	[{'url': 'https://storage.googleapis.com/publi...	HGNC:10	Merged/Split	A2MRAP	[{'hgnc_id': 'HGNC:6701', 'symbol': 'LRPAP1', ...
2	[{'url': 'https://storage.googleapis.com/publi...	HGNC:1000	Entry Withdrawn	BCL5	[]
3	[{'url': 'https://storage.googleapis.com/publi...	HGNC:10005	Merged/Split	RH	[{'hgnc_id': 'HGNC:10009', 'symbol': 'RHD', 's...
4	[{'url': 'https://storage.googleapis.com/publi...	HGNC:10014	Merged/Split	RIEG1	[{'hgnc_id': 'HGNC:9005', 'symbol': 'PITX2', '...

R

In [1]:

library(bedrockbio)

lf <- load_table("hgnc.withdrawn")
df <- head(lf, 5) |> collect()

head(df)

Out[1]:

Sample output (5 rows, showing 3 of 5 columns)
   hgnc_id    | status          | symbol
   ---------- | --------------- | ------
0  HGNC:1     | Entry Withdrawn | A12M1
1  HGNC:10    | Merged/Split    | A2MRAP
2  HGNC:1000  | Entry Withdrawn | BCL5
3  HGNC:10005 | Merged/Split    | RH
4  HGNC:10014 | Merged/Split    | RIEG1

Description

HGNC symbol reports that are no longer approved, including symbols merged or split into replacement reports.

Partitions

Not partitioned.

Schema

Column	Type	Description
sources	STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[]	Provenance for the HGNC withdrawn.txt file.
hgnc_id	TEXT	Stable HGNC identifier for the withdrawn or merged/split symbol report.
status	TEXT	HGNC withdrawal status — Entry Withdrawn or Merged/Split.
symbol	TEXT	Withdrawn HGNC symbol.
merged_into	STRUCT(hgnc_id TEXT, symbol TEXT, status TEXT)[]	HGNC reports a merged/split symbol was merged into, each with hgnc_id, symbol, and status; empty for entry-withdrawn symbols.