colocalisation
Identifier
Section titled “Identifier”Description
Section titled “Description”GWAS-GWAS and GWAS-molQTL credible set colocalisation results using colocPIP and eCAVIAR methods.
Dataset includes colocalising pairs and the statistics used to estimate the colocalisation [Genetics]
Partitions
Section titled “Partitions”release'26.06'
Schema
Section titled “Schema”| Column | Type | Description |
|---|---|---|
leftStudyLocusId |
TEXT |
Study-locus identifier for left-side overlapping signal |
rightStudyLocusId |
TEXT |
Study-locus identifier for right-side overlapping signal |
rightStudyType |
TEXT |
Type of the right-side study (e.g., gwas, eqtl) |
chromosome |
TEXT |
Chromosome where the colocalisation occurs |
colocalisationMethod |
TEXT |
Method used to estimate colocalisation (e.g., coloc) |
numberColocalisingVariants |
BIGINT |
Number of variants intersecting between two overlapping study-loci |
h3 |
DOUBLE |
Posterior probability that both traits are associated, but with different causal variants (H3) |
h4 |
DOUBLE |
Posterior probability that both traits are associated and share a causal variant (H4) |
clpp |
DOUBLE |
Colocalisation posterior probability (CLPP) score estimating the probability of shared causal variants |
betaRatioSignAverage |
DOUBLE |
Average sign of the beta ratio between colocalised variants |
release |
TEXT |
Partition column. Open Targets Platform release version (major.minor), e.g. 26.06. [Added during ingest.] |