relationships
Identifier
Section titled “Identifier”Description
Section titled “Description”Selected NCBI Gene relationships, one row per directed pair of GeneIDs.
It includes readthrough, region, functional-gene, and pseudogene relationships, but is not a comprehensive relationship resource.
gene_id has the stated relationship to related_gene_id.
NCBI reports relationships symmetrically where appropriate, but the table retains its supplied row direction.
Orthologs are excluded; use orthologs when that table is available.
Partitions
Section titled “Partitions”Not partitioned.
Schema
Section titled “Schema”| Column | Type | Description |
|---|---|---|
sources |
STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[] |
Provenance for the NCBI Gene group file. |
taxon_id |
TEXT |
NCBI taxonomy identifier for the source gene’s species or strain. |
gene_id |
TEXT |
Source NCBI Gene identifier. |
relationship |
TEXT |
NCBI relationship from gene_id to related_gene_id. |
related_taxon_id |
TEXT |
NCBI taxonomy identifier for the related gene’s species or strain. |
related_gene_id |
TEXT |
Related NCBI Gene identifier. |