open_targets.disease_hpo

Python

In [1]:

import bedrock_bio as bb

rel = bb.load_table('open_targets.disease_hpo')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()

Out[1]:

	id	name	description	dbXRefs	parents	obsoleteTerms	version
0	CHEBI_10545	electron	Elementary particle not affected by the strong...	<NA>	[CHEBI_36338]	<NA>	26.09
1	CHEBI_11596	2-hydroxyglutarate(2-)	A dicarboxylic acid dianion resulting from the...	<NA>	[CHEBI_132941, CHEBI_28965]	<NA>	26.09
2	CHEBI_11851	3-methyl-2-oxobutanoate	A 2-oxo monocarboxylic acid anion that is the ...	<NA>	[CHEBI_191201, CHEBI_35179, CHEBI_58955, CHEBI...	<NA>	26.09
3	CHEBI_11955	4-amino-3-hydroxybutanoate	The conjugate base of γ-amino-β-hydroxybutyric...	<NA>	[CHEBI_36059, CHEBI_71666]	<NA>	26.09
4	CHEBI_12109	5-aminolevulinate	NaN	<NA>	[CHEBI_35757]	<NA>	26.09

R

In [1]:

library(bedrockbio)

lf <- load_table("open_targets.disease_hpo")
df <- head(lf, 5) |> collect()

head(df)

Out[1]:

Sample output (5 rows, showing 4 of 7 columns)
   id          | name                     | description              | version
   ----------- | ------------------------ | ------------------------ | -------
0  CHEBI_10545 | electron                 | Elementary particle not… | 26.09
1  CHEBI_11596 | 2-hydroxyglutarate(2-)   | A dicarboxylic acid dia… | 26.09
2  CHEBI_11851 | 3-methyl-2-oxobutanoate  | A 2-oxo monocarboxylic … | 26.09
3  CHEBI_11955 | 4-amino-3-hydroxybutano… | The conjugate base of γ… | 26.09
4  CHEBI_12109 | 5-aminolevulinate        | —                        | 26.09

Description

Human Phenotype Ontology subset of information included in the Platform [Ontology]

Partitions

Not partitioned.

Schema

Column	Type	Description
id	TEXT	Unique identifier for the disease in the Human Phenotype Ontology (HPO)
name	TEXT	Name of the disease (in HPO)
description	TEXT	Description of the disease
dbXRefs	TEXT[]	Database cross-references for the HPO disease
parents	TEXT[]	List of parent terms for the disease
obsoleteTerms	TEXT[]	List of obsolete terms for the disease
version	TEXT	Open Targets Platform release version (major.minor), e.g. 26.09. Added during ingest.