ncbi_taxonomy.images

Python

In [1]:

import bedrock_bio as bb

rel = bb.load_table('ncbi_taxonomy.images')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()

Out[1]:

	sources	image_id	image_key	image_url	license	attribution	image_source	properties	taxon_ids
0	[{'url': 'https://ftp.ncbi.nlm.nih.gov/pub/tax...	100000	image:Colletes simulans	http://www.ncbi.nlm.nih.gov/Taxonomy/taxi/imag...	CC BY-NC-SA (https://creativecommons.org/licen...	Royal Tyler	iNaturalist.com	[]	[395738]
1	[{'url': 'https://ftp.ncbi.nlm.nih.gov/pub/tax...	100001	image:Physisporinus tasmanicus	http://www.ncbi.nlm.nih.gov/Taxonomy/taxi/imag...	CC BY (https://creativecommons.org/licenses/by...	Heidi Meudt	iNaturalist.com	[]	[2917413]
2	[{'url': 'https://ftp.ncbi.nlm.nih.gov/pub/tax...	100002	image:Colletes sierrensis	http://www.ncbi.nlm.nih.gov/Taxonomy/taxi/imag...	CC BY-NC (https://creativecommons.org/licenses...	martineorianauriol	iNaturalist.com	[]	[420751]
3	[{'url': 'https://ftp.ncbi.nlm.nih.gov/pub/tax...	100003	image:Physma byrsaeum	http://www.ncbi.nlm.nih.gov/Taxonomy/taxi/imag...	CC BY-NC (https://creativecommons.org/licenses...	Common Blue	iNaturalist.com	[]	[586083]
4	[{'url': 'https://ftp.ncbi.nlm.nih.gov/pub/tax...	100004	image:Colletes susannae	http://www.ncbi.nlm.nih.gov/Taxonomy/taxi/imag...	CC BY-NC (https://creativecommons.org/licenses...	dleaon1	iNaturalist.com	[]	[3038044]

R

In [1]:

library(bedrockbio)

lf <- load_table("ncbi_taxonomy.images")
df <- head(lf, 5) |> collect()

head(df)

Out[1]:

Sample output (5 rows, showing 6 of 9 columns)
   image_id | image_key                | image_url                | license                  | attribution        | image_source
   -------- | ------------------------ | ------------------------ | ------------------------ | ------------------ | ---------------
0  100000   | image:Colletes simulans  | http://www.ncbi.nlm.nih… | CC BY-NC-SA (https://cr… | Royal Tyler        | iNaturalist.com
1  100001   | image:Physisporinus tas… | http://www.ncbi.nlm.nih… | CC BY (https://creative… | Heidi Meudt        | iNaturalist.com
2  100002   | image:Colletes sierrens… | http://www.ncbi.nlm.nih… | CC BY-NC (https://creat… | martineorianauriol | iNaturalist.com
3  100003   | image:Physma byrsaeum    | http://www.ncbi.nlm.nih… | CC BY-NC (https://creat… | Common Blue        | iNaturalist.com
4  100004   | image:Colletes susannae  | http://www.ncbi.nlm.nih… | CC BY-NC (https://creat… | dleaon1            | iNaturalist.com

Description

Images associated with NCBI Taxonomy nodes, one row per image.

Partitions

Not partitioned.

Schema

Column	Type	Description
sources	STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[]	Source provenance for the row.
image_id	TEXT	NCBI Taxonomy image ID.
image_key	TEXT	NCBI image key.
image_url	TEXT	Image URL.
license	TEXT	Image license or rights statement.
attribution	TEXT	Image attribution, if supplied.
image_source	TEXT	Source of the image.
properties	TEXT[]	Image properties, split from NCBI’s semicolon-delimited field.
taxon_ids	TEXT[]	Taxonomy IDs associated with the image, split from NCBI’s space-delimited field.