open_targets.interaction_evidence

Python
R

import bedrock_bio as bb

rel = bb.load_table('open_targets.interaction_evidence')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()

	interactionResources	interactionScore	interactionDetectionMethodShortName	interactionDetectionMethodMiIdentifier	evidenceScore	interactionIdentifier	pubmedId	interactionId	expansionMethodMiIdentifier	expansionMethodShortName	hostOrganismScientificName	hostOrganismTaxId	hostOrganismTissue	interactionTypeMiIdentifier	interactionTypeShortName	participantDetectionMethodA	participantDetectionMethodB	version
0	{'databaseVersion': '12.0', 'sourceDatabase': ...	0.386	textmining	MI:0110	0.091	None	None	-2067144388052508362	None	None	None	<NA>	<NA>	None	None	<NA>	<NA>	26.09
1	{'databaseVersion': '12.0', 'sourceDatabase': ...	0.162	experimental	MI:0591	0.091	None	None	-2630986937576172332	None	None	None	<NA>	<NA>	None	None	<NA>	<NA>	26.09
2	{'databaseVersion': '12.0', 'sourceDatabase': ...	0.315	coexpression	MI:2231	0.235	None	None	6541324438376262772	None	None	None	<NA>	<NA>	None	None	<NA>	<NA>	26.09
3	{'databaseVersion': '12.0', 'sourceDatabase': ...	0.358	experimental	MI:0591	0.045	None	None	6118064863188111017	None	None	None	<NA>	<NA>	None	None	<NA>	<NA>	26.09
4	{'databaseVersion': '12.0', 'sourceDatabase': ...	0.163	coexpression	MI:2231	0.070	None	None	3321164424157359627	None	None	None	<NA>	<NA>	None	None	<NA>	<NA>	26.09

library(bedrockbio)

lf <- load_table("open_targets.interaction_evidence")
df <- head(lf, 5) |> collect()

head(df)

Sample output (5 rows, showing 8 of 18 columns)
   interactionScore | interactionDetectionMethodShortName | interactionDetectionMethodMiIdentifier | evidenceScore | interactionIdentifier | pubmedId | interactionId        | expansionMethodMiIdentifier
   ---------------- | ----------------------------------- | -------------------------------------- | ------------- | --------------------- | -------- | -------------------- | ---------------------------
0  0.386            | textmining                          | MI:0110                                | 0.091         | —                     | —        | -2067144388052508362 | —
1  0.162            | experimental                        | MI:0591                                | 0.091         | —                     | —        | -2630986937576172332 | —
2  0.315            | coexpression                        | MI:2231                                | 0.235         | —                     | —        | 6541324438376262772  | —
3  0.358            | experimental                        | MI:0591                                | 0.045         | —                     | —        | 6118064863188111017  | —
4  0.163            | coexpression                        | MI:2231                                | 0.07          | —                     | —        | 3321164424157359627  | —

Description

Experimental evidence supporting molecular interactions (‘interaction’) dataset [Target]

Partitions

Not partitioned.

Schema

Column	Type	Description
`interactionResources`	`STRUCT(databaseVersion TEXT, sourceDatabase TEXT)`	Databases providing evidence for the interaction
`interactionScore`	`DOUBLE`	Score assigned to the interaction based on supporting evidence
`interactionDetectionMethodShortName`	`TEXT`	Short name of the method used to detect the interaction
`interactionDetectionMethodMiIdentifier`	`TEXT`	Molecular Interactions (MI) identifier for the interaction detection method [bioregistry:mi]
`evidenceScore`	`DOUBLE`	Score indicating the confidence or strength of the interaction evidence
`interactionIdentifier`	`TEXT`	Unique identifier for the interaction evidence entry at the source
`pubmedId`	`TEXT`	PubMed ID of the publication supporting the interaction evidence
`interactionId`	`BIGINT`	Identifier of the molecular interaction this evidence supports
`expansionMethodMiIdentifier`	`TEXT`	Molecular Interactions (MI) identifier for the expansion method used [bioregistry:mi]
`expansionMethodShortName`	`TEXT`	Short name of the method used to expand the interaction dataset
`hostOrganismScientificName`	`TEXT`	Scientific name of the host organism in which the interaction was observed
`hostOrganismTaxId`	`BIGINT`	NCBI taxon ID of the host organism
`hostOrganismTissue`	`STRUCT(fullName TEXT, shortName TEXT, xrefs TEXT[])`	Tissue of the host organism where the interaction was identified
`interactionTypeMiIdentifier`	`TEXT`	Molecular Interactions (MI) identifier for the type of interaction [bioregistry:mi]
`interactionTypeShortName`	`TEXT`	Short name of the interaction type
`participantDetectionMethodA`	`STRUCT(miIdentifier TEXT, shortName TEXT)[]`	Detection method used to identify participant A in the interaction
`participantDetectionMethodB`	`STRUCT(miIdentifier TEXT, shortName TEXT)[]`	Detection method used to identify participant B in the interaction
`version`	`TEXT`	Open Targets Platform release version (major.minor), e.g. 26.09. Added during ingest.