protein_sequences

Identifier

ensembl.protein_sequences

Description

Individual amino-acid positions in Ensembl protein translations.

One row per 1-based position in the pep.all FASTA.

Join to cds on the stable protein_id and use protein_version to identify the exact FASTA record version.

Related tables: ensembl.cds (join on protein_id); ensembl.xrefs (join on protein_id).

Partitions

• genbank_assembly_accession
  • 'GCA_000001215.4'
  • 'GCA_000001405.29'
  • 'GCA_000001635.9'
  • 'GCA_000001735.1'
  • 'GCA_000002035.4'
  • 'GCA_000002285.4'
  • 'GCA_000002525.1'
  • 'GCA_000002655.1'
  • 'GCA_000002765.3'
  • 'GCA_000002855.2'
  • 'GCA_000002945.2'
  • 'GCA_000002985.3'
  • 'GCA_000003025.6'
  • 'GCA_000003195.3'
  • 'GCA_000003625.1'
  • 'GCA_000004195.4'
  • 'GCA_000004515.4'
  • 'GCA_000005845.2'
  • 'GCA_000006565.2'
  • 'GCA_000006665.1'
  • 'GCA_000006745.1'
  • 'GCA_000006765.1'
  • 'GCA_000006845.1'
  • 'GCA_000006885.1'
  • 'GCA_000006925.2'
  • 'GCA_000006945.2'
  • 'GCA_000007545.1'
  • 'GCA_000007565.2'
  • 'GCA_000007785.1'
  • 'GCA_000008525.1'
  • 'GCA_000008765.1'
  • 'GCA_000008805.1'
  • 'GCA_000009045.1'
  • 'GCA_000009085.1'
  • 'GCA_000009205.2'
  • 'GCA_000011065.1'
  • 'GCA_000011325.1'
  • 'GCA_000013425.1'
  • 'GCA_000013465.1'
  • 'GCA_000015005.1'
  • 'GCA_000016305.1'
  • 'GCA_000025565.1'
  • 'GCA_000025985.1'
  • 'GCA_000027005.1'
  • 'GCA_000027305.1'
  • 'GCA_000146045.2'
  • 'GCA_000149245.3'
  • 'GCA_000151735.1'
  • 'GCA_000167675.2'
  • 'GCA_000174395.2'
  • 'GCA_000182965.3'
  • 'GCA_000196035.1'
  • 'GCA_000196095.1'
  • 'GCA_000215625.1'
  • 'GCA_000226075.1'
  • 'GCA_000237925.3'
  • 'GCA_000285655.3'
  • 'GCA_000306945.1'
  • 'GCA_000349665.1'
  • 'GCA_000409795.2'
  • 'GCA_000805365.1'
  • 'GCA_001433935.1'
  • 'GCA_001457595.1'
  • 'GCA_001704415.1'
  • 'GCA_001858045.3'
  • 'GCA_002263795.4'
  • 'GCA_002863925.1'
  • 'GCA_003339765.3'
  • 'GCA_003668045.2'
  • 'GCA_008728515.1'
  • 'GCA_011100615.1'
  • 'GCA_016699485.1'
  • 'GCA_016772045.2'
  • 'GCA_018294505.1'
  • 'GCA_036323735.1'
  • 'GCA_902167145.1'
  • 'GCA_905237065.2'

Schema

Column	Type	Description
sources	STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[]	Provenance for the Ensembl FASTA file.
release	TEXT	Ensembl release number the FASTA was drawn from.
genbank_assembly_accession	TEXT	Partition column. GenBank assembly accession (partition column).
protein_id	TEXT	Ensembl protein stable ID from the FASTA record identifier.
protein_version	INT	Version suffix of the FASTA protein identifier. May be null.
position	INT	1-based amino-acid position on the protein.
amino_acid	TEXT	Uppercase extended IUPAC amino-acid code at position.