hgnc.resources

Python

In [1]:

import bedrock_bio as bb

rel = bb.load_table('hgnc.resources')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()

Out[1]:

	sources	resource_id	name	url	description	uses_approved
0	[{'url': 'https://storage.googleapis.com/publi...	1	CAZy	http://www.cazy.org/	Carbohydrate-Active enZYmes Database	False
1	[{'url': 'https://storage.googleapis.com/publi...	10	PKR	http://pkr.genomics.purdue.edu/pkr/Welcome.do	Protein Kinase Resource	False
2	[{'url': 'https://storage.googleapis.com/publi...	1016	Complex Portal: NuRF chromatin remodeling complex	https://www.ebi.ac.uk/complexportal/complex/CP...	NaN	False
3	[{'url': 'https://storage.googleapis.com/publi...	1017	Complex Portal: CERF chromatin remodelling com...	https://www.ebi.ac.uk/complexportal/complex/CP...	NaN	False
4	[{'url': 'https://storage.googleapis.com/publi...	1018	Complex Portal: ACF chromatin remodeling complex	https://www.ebi.ac.uk/complexportal/complex/CP...	NaN	False

R

In [1]:

library(bedrockbio)

lf <- load_table("hgnc.resources")
df <- head(lf, 5) |> collect()

head(df)

Out[1]:

Sample output (5 rows, showing 5 of 6 columns)
   resource_id | name                     | url                      | description              | uses_approved
   ----------- | ------------------------ | ------------------------ | ------------------------ | -------------
0  1           | CAZy                     | http://www.cazy.org/     | Carbohydrate-Active enZ… | false
1  10          | PKR                      | http://pkr.genomics.pur… | Protein Kinase Resource  | false
2  1016        | Complex Portal: NuRF ch… | https://www.ebi.ac.uk/c… | —                        | false
3  1017        | Complex Portal: CERF ch… | https://www.ebi.ac.uk/c… | —                        | false
4  1018        | Complex Portal: ACF chr… | https://www.ebi.ac.uk/c… | —                        | false

Description

External resources linked by HGNC to one or more gene families.

Partitions

Not partitioned.

Schema

Column	Type	Description
sources	STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[]	Provenance for the HGNC gene-family external_resource.csv file.
resource_id	TEXT	Source identifier for the external resource.
name	TEXT	External resource name.
url	TEXT	External resource URL.
description	TEXT	External resource description, if supplied.
uses_approved	BOOLEAN	Whether the external resource uses approved HGNC gene symbols or identifiers.