orthologs
Identifier
Section titled “Identifier”Description
Section titled “Description”Directed NCBI Gene orthology pairs, one row per primary GeneID and ortholog GeneID pair.
NCBI does not report the pairs symmetrically: gene_id is the primary member chosen for an ortholog set, while ortholog_gene_id is another member.
The source’s constant relationship value of Ortholog is omitted.
Partitions
Section titled “Partitions”Not partitioned.
Schema
Section titled “Schema”| Column | Type | Description |
|---|---|---|
sources |
STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[] |
Provenance for the NCBI Gene orthologs file. |
taxon_id |
TEXT |
NCBI taxonomy identifier for the primary gene’s species or strain. |
gene_id |
TEXT |
Primary NCBI Gene identifier in the ortholog set. |
ortholog_taxon_id |
TEXT |
NCBI taxonomy identifier for the ortholog gene’s species or strain. |
ortholog_gene_id |
TEXT |
NCBI Gene identifier for the orthologous gene. |