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bedrock.bio

open_targets.biosample

import bedrock_bio as bb

rel = bb.load_table('open_targets.biosample')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()
biosampleId biosampleName description xrefs synonyms parents ancestors children descendants version
0 BFO_0000017 realizable entity NaN [] [] [BFO_0000020, COB_0000502] [BFO_0000001, BFO_0000002, BFO_0000020, COB_00... [BFO_0000016, BFO_0000023] [BFO_0000016, BFO_0000034, BFO_0000023] 26.09
1 BFO_0000050 part of a core relation that holds between a part and ... [BFO:0000050] [] <NA> [] <NA> [] 26.09
2 BSPO_0000054 anatomical side An anatomical region bounded by a plane perpen... [FBql:00005841] [] [BSPO_0000070] [CARO_0000003, CARO_0000006, CARO_0000000, BSP... [BSPO_0000000, BSPO_0000007] [BSPO_0000000, BSPO_0000007] 26.09
3 BSPO_0000111 right of Closer to the right side of the organism. Exam... [BSPO:0000111] [] <NA> [] <NA> [] 26.09
4 BSPO_0015014 immediately superficial to x immediately superficial to y iff x superfici... [BSPO:0015014] [] <NA> [] <NA> [] 26.09

Description

Section titled “Description”

Integration of metadata related to tissues, cell types or cell lines (biosamples) derived from the UBERON, CL and EFO ontologies [Ontology]

Partitions

Section titled “Partitions”

Not partitioned.

Schema

Section titled “Schema”
Column Type Description
biosampleId TEXT Unique identifier for the biosample
biosampleName TEXT Name of the biosample
description TEXT Description of the biosample
xrefs TEXT[] Cross-reference IDs from other ontologies
synonyms TEXT[] List of synonymous names for the term
parents TEXT[] Direct parent biosample IDs in the ontology
ancestors TEXT[] List of ancestor biosample IDs in the ontology
children TEXT[] Direct child biosample IDs in the ontology
descendants TEXT[] List of descendant biosample IDs in the ontology
version TEXT Open Targets Platform release version (major.minor), e.g. 26.09. Added during ingest.