hgnc.gene_family_links

Python

In [1]:

import bedrock_bio as bb

rel = bb.load_table('hgnc.gene_family_links')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()

Out[1]:

	sources	hgnc_id	family_id
0	[{'url': 'https://storage.googleapis.com/publi...	HGNC:100	290
1	[{'url': 'https://storage.googleapis.com/publi...	HGNC:10000	720
2	[{'url': 'https://storage.googleapis.com/publi...	HGNC:10001	720
3	[{'url': 'https://storage.googleapis.com/publi...	HGNC:10002	1691
4	[{'url': 'https://storage.googleapis.com/publi...	HGNC:10002	2329

R

In [1]:

library(bedrockbio)

lf <- load_table("hgnc.gene_family_links")
df <- head(lf, 5) |> collect()

head(df)

Out[1]:

Sample output (5 rows, showing 2 of 3 columns)
   hgnc_id    | family_id
   ---------- | ---------
0  HGNC:100   | 290
1  HGNC:10000 | 720
2  HGNC:10001 | 720
3  HGNC:10002 | 1691
4  HGNC:10002 | 2329

Description

HGNC’s explicit many-to-many mapping between gene symbol reports and gene families.

Partitions

Not partitioned.

Schema

Column	Type	Description
sources	STRUCT(url TEXT, filename TEXT, last_modified_at TIMESTAMPTZ, sha256 TEXT)[]	Provenance for the HGNC gene-family gene_has_family.csv file.
hgnc_id	TEXT	Stable HGNC identifier for the member gene symbol report.
family_id	TEXT	HGNC gene-family identifier.