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bedrock.bio

open_targets.evidence_gwas_credible_sets

import bedrock_bio as bb

rel = bb.load_table('open_targets.evidence_gwas_credible_sets')

df = rel.limit(5).pl()  # Polars
df = rel.limit(5).df()  # Pandas
df.head()
id targetFromSourceId diseaseFromSourceMappedId datatypeId datasourceId resourceScore curationDate studyLocusId literature qualityControls diseaseId targetId publicationDate evidenceDate score version
0 000105495d2dc078f1ecf8341a3baceccf6db2ea ENSG00000077498 MONDO_0021454 genetic_association gwas_credible_sets 0.105246 2024-07-19 925bb486bd43aaf8f289510335454395 [39024449] [] MONDO_0021454 ENSG00000077498 2024-07-19 2024-07-19 0.105246 26.09
1 0024fdd2eb34d5c0c22a9d653c27176d8739efa5 ENSG00000065600 EFO_0004612 genetic_association gwas_credible_sets 0.264341 2021-12-09 1f6c9e4a96b6723a4cc84d6a30c2f803 [34887591] [] EFO_0004612 ENSG00000065600 2021-12-09 2021-12-09 0.264341 26.09
2 0031096f041f714d928ef216d8ce47b73f2a66a1 ENSG00000186788 MONDO_0011122 genetic_association gwas_credible_sets 0.053869 2024-07-19 5389127c619dad166bac0243d81bbe7b [39024449] [] MONDO_0011122 ENSG00000186788 2024-07-19 2024-07-19 0.053869 26.09
3 00375df7ea23772bc00bff42847c40b66a09d47b ENSG00000183072 OBA_VT0001253 genetic_association gwas_credible_sets 0.058452 2025-09-18 faa21bd49189b80dfeb144c36d0888ce [40968291] [] OBA_VT0001253 ENSG00000183072 2025-09-18 2025-09-18 0.058452 26.09
4 0045fad78f5fd63992a255050a8bf59517202403 ENSG00000183049 EFO_0011015 genetic_association gwas_credible_sets 0.914926 2025-05-13 44e050574993000d362473211f4c1ed0 [40360725] [] EFO_0011015 ENSG00000183049 2025-05-13 2025-05-13 0.914926 26.09

Description

Section titled “Description”

Disease-target evidence based on Locus-to-Gene prediction on GWAS credible sets [Target-Disease]

Partitions

Section titled “Partitions”

Not partitioned.

Schema

Section titled “Schema”
Column Type Description
id TEXT Identifer of the disease/target evidence
targetFromSourceId TEXT Target ID in resource of origin (accepted sources include Ensembl gene ID, Uniprot ID, gene symbol), only capital letters are accepted
diseaseFromSourceMappedId TEXT Mapped Open Targets disease identifier
datatypeId TEXT Type of the evidence
datasourceId TEXT Identifer of the evidence source
resourceScore DOUBLE Score provided by datasource indicating strength of target-disease association
curationDate TEXT Date of the GWAS study curation
studyLocusId TEXT Identifier of the Open Targets Study Locus
literature TEXT[] List of PubMed or preprint reference identifiers
qualityControls TEXT[] Evidence quality flags
diseaseId TEXT Open Targets disease identifier
targetId TEXT Open Targets target identifier
publicationDate TEXT Date of the earliest publication supporting the evidence
evidenceDate TEXT Earliest data for the evidence
score DOUBLE Score of the evidence reflecting the strength of the disease/target relationship
version TEXT Open Targets Platform release version (major.minor), e.g. 26.09. Added during ingest.