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pan_ukbb/ld/matrix

ColumnTypeDescription
ancestryStringPartitioning column. One of {'AFR', 'AMR', 'CSA', 'EAS', 'EUR', 'MID'}.
chromosomeStringPartitioning column. Chromosomes 1-22, X.
position_iInt32GRCh38 position of the first variant.
position_jInt32GRCh38 position of the second variant.
rFloat32See details here. Pearson correlation coefficient between the first and second variant. Variant pairs outside of a 10 Mb window are inferred to have r = 0.00 and do not appear in this dataset. Additionally, pairs with computed correlation -0.01 < r < 0.01 have been rounded to 0.00 and also do not appear in this dataset.